Takes the acmap object and, assuming the column bases associated with the
currently selected or specified optimization, returns the table distances
calculated from the titer data. For more information on column bases and
their role in antigenic cartography see
vignette("intro-to-antigenic-cartography")
tableDistances(map, optimization_number = 1)The acmap data object
The optimization number
Returns a matrix of numeric table distances
Other map diagnostic functions:
agCohesion(),
bootstrapBlobs(),
bootstrapMap(),
checkHemisphering(),
dimensionTestMap(),
logtiterTable(),
map-table-distances,
mapBootstrapCoords,
mapDistances(),
mapRelaxed(),
mapResiduals(),
pointStress,
ptBootstrapBlob,
ptBootstrapCoords(),
ptLeverage,
ptTriangulationBlob,
recalculateStress(),
stressTable(),
tableColbases(),
triangulationBlobs(),
unstableMaps
Other functions relating to map stress calculation:
logtiterTable(),
mapDistances(),
mapResiduals(),
pointStress,
recalculateStress(),
stressTable(),
tableColbases()