Get a table of residuals from an acmap — mapResiduals • Racmacs

This is the difference between the table distance and the map distance

mapResiduals(map, exclude_nd = FALSE, optimization_number = 1)

Arguments

map: The acmap object
exclude_nd: Should values associated with non-detectable measurements like <10 be set to NA
optimization_number: The optimization number

Value

Returns a matrix of residuals, showing the residual error between map distance and table distance for each antigen-sera pair.

See also

Other map diagnostic functions: agCohesion(), bootstrapBlobs(), bootstrapMap(), checkHemisphering(), dimensionTestMap(), logtiterTable(), map-table-distances, mapBootstrapCoords, mapDistances(), mapRelaxed(), pointStress, ptBootstrapBlob, ptBootstrapCoords(), ptLeverage, ptTriangulationBlob, recalculateStress(), stressTable(), tableColbases(), tableDistances(), triangulationBlobs(), unstableMaps

Other functions relating to map stress calculation: logtiterTable(), mapDistances(), pointStress, recalculateStress(), stressTable(), tableColbases(), tableDistances()