Return calculated map distances for an acmap — mapDistances • Racmacs

Takes the acmap object and calculates euclidean distances between antigens and sera for the currently selected or specified optimization.

mapDistances(map, optimization_number = 1)

Arguments

map: The acmap data object
optimization_number: The optimization number

Value

Returns a matrix of map distances with antigens as rows and sera as columns.

See also

Other map diagnostic functions: agCohesion(), bootstrapBlobs(), bootstrapMap(), checkHemisphering(), dimensionTestMap(), logtiterTable(), map-table-distances, mapBootstrapCoords, mapRelaxed(), mapResiduals(), pointStress, ptBootstrapBlob, ptBootstrapCoords(), ptLeverage, ptTriangulationBlob, recalculateStress(), stressTable(), tableColbases(), tableDistances(), triangulationBlobs(), unstableMaps

Other functions relating to map stress calculation: logtiterTable(), mapResiduals(), pointStress, recalculateStress(), stressTable(), tableColbases(), tableDistances()