Takes the acmap object and calculates euclidean distances between antigens and sera for the currently selected or specified optimization.

mapDistances(map, optimization_number = 1)

Arguments

map

The acmap data object

optimization_number

The optimization number

Value

Returns a matrix of map distances with antigens as rows and sera as columns.

See also

Other map diagnostic functions functions relating to map stress calculation: logtiterTable(), mapResiduals(), pointStress, recalculateStress(), stressTable(), tableColbases(), tableDistances()