Functions to get stress associated with individual points in a map.

agStress(map, antigens = TRUE, optimization_number = 1)

srStress(map, sera = TRUE, optimization_number = 1)

srStressPerTiter(map, sera = TRUE, optimization_number = 1, exclude_nd = FALSE)

agStressPerTiter(
  map,
  antigens = TRUE,
  optimization_number = 1,
  exclude_nd = FALSE
)

Arguments

map

The acmap data object

antigens

Which antigens to check stress for, specified by index or name (defaults to all antigens).

optimization_number

The optimization number

sera

Which sera to check stress for, specified by index or name (defaults to all sera).

exclude_nd

Should non-detectable values (e.g. <10) be excluded when calculating point stress?

See also

See mapStress() for getting the total map stress directly.

Other map diagnostic functions functions relating to map stress calculation: logtiterTable(), mapDistances(), mapResiduals(), recalculateStress(), stressTable(), tableColbases(), tableDistances()