Get individual point stress

Functions to get stress associated with individual points in a map.

agStress(map, antigens = TRUE, optimization_number = 1)

srStress(map, sera = TRUE, optimization_number = 1)

srStressPerTiter(map, sera = TRUE, optimization_number = 1)

agStressPerTiter(map, antigens = TRUE, optimization_number = 1)

Arguments

map

The acmap data object

antigens

Which antigens to check stress for, specified by index or name (defaults to all antigens).

optimization_number

The optimization number

sera

Which sera to check stress for, specified by index or name (defaults to all sera).

Value

A numeric vector of point stresses

See also

See mapStress() for getting the total map stress directly.

Other map diagnostic functions: agCohesion(), bootstrapBlobs(), bootstrapMap(), checkHemisphering(), dimensionTestMap(), logtiterTable(), map-table-distances, mapBootstrapCoords, mapDistances(), mapRelaxed(), mapResiduals(), ptBootstrapBlob, ptBootstrapCoords(), ptLeverage, ptTriangulationBlob, recalculateStress(), stressTable(), tableColbases(), tableDistances(), triangulationBlobs(), unstableMaps

Other functions relating to map stress calculation: logtiterTable(), mapDistances(), mapResiduals(), recalculateStress(), stressTable(), tableColbases(), tableDistances()