Getting and setting antigen sequence information

Getting and setting antigen sequence information

agSequences(map, missing_value = ".")

agSequences(map) <- value

agNucleotideSequences(map, missing_value = ".")

agNucleotideSequences(map) <- value

Arguments

map

The acmap data object

missing_value

Character to use to fill in portions of the sequence matrix where sequence data is missing.

value

A character matrix of sequences with rows equal to the number of antigens

Value

A character matrix of sequences, where each row represents an antigen.

See also

Other antigen and sera attribute functions: agAttributes, agGroups(), agHomologousSr(), agLabIDs(), ptAnnotations, ptClades, srAttributes, srGroups(), srHomologousAgs(), srSequences()