Relax a map one step in the optimiser — relaxMapOneStep • Racmacs

Relax a map one step in the optimiser

relaxMapOneStep(
  map,
  optimization_number = 1,
  fixed_antigens = FALSE,
  fixed_sera = FALSE,
  options = list()
)

Arguments

map: The acmap data object
optimization_number: The map optimization number
fixed_antigens: Antigens to set fixed positions for when relaxing
fixed_sera: Sera to set fixed positions for when relaxing
options: List of named optimizer options, see RacOptimizer.options()

Value

Returns an updated map object

See also

Other map optimization functions: RacOptimizer.options(), make.acmap(), moveTrappedPoints(), optimizeMap(), randomizeCoords(), relaxMap()