Relax a map — relaxMap • Racmacs

Optimize antigen and serum positions starting from their current coordinates in the selected or specified optimization.

relaxMap(
  map,
  optimization_number = 1,
  fixed_antigens = FALSE,
  fixed_sera = FALSE,
  titer_weights = NULL,
  options = list()
)

Arguments

map: The acmap object
optimization_number: The optimization number to relax
fixed_antigens: Antigens to set fixed positions for when relaxing
fixed_sera: Sera to set fixed positions for when relaxing
titer_weights: An optional matrix of weights to assign each titer when optimizing
options: List of named optimizer options, see RacOptimizer.options()

Value

Returns an acmap object with the optimization relaxed.

See also

See optimizeMap() for performing new optimization runs from random starting coordinates.

Other map optimization functions: RacOptimizer.options(), make.acmap(), moveTrappedPoints(), optimizeMap(), randomizeCoords(), relaxMapOneStep()