Realigns the coordinates of a map to match a target map as closely as possible, based on a procrustes analysis. Note that all optimization runs will be separately aligned to match as closely as possible the first optimization run of the target map.

realignMap(map, target_map, translation = TRUE, scaling = FALSE)

map | The acmap to realign. |
---|---|

target_map | The acmap to realign to. |

translation | Should translation be allowed |

scaling | Should scaling be allowed (generally not recommended unless comparing maps made with different assays) |

Returns the map aligned to the target map

Other functions to compare maps:
`matchStrains`

,
`procrustesData()`

,
`procrustesMap()`

,
`realignOptimizations()`