Realigns the coordinates of a map to match a target map as closely as possible, based on a procrustes analysis. Note that all optimization runs will be separately aligned to match as closely as possible the first optimization run of the target map.

realignMap(map, target_map, translation = TRUE, scaling = FALSE)

Arguments

map

The acmap to realign.

target_map

The acmap to realign to.

translation

Should translation be allowed

scaling

Should scaling be allowed (generally not recommended unless comparing maps made with different assays)

Value

Returns the map aligned to the target map

See also

Other functions to compare maps: matchStrains, procrustesData(), procrustesMap(), realignOptimizations()