Returns information from one map procrusted to another.
procrustesMap( map, comparison_map, optimization_number = 1, comparison_optimization_number = 1, antigens = TRUE, sera = TRUE, translation = TRUE, scaling = FALSE )
The acmap data object
The acmap data object to procrustes against
The map optimization to use in the procrustes calculation (other optimization runs are discarded)
The optimization run int the comparison map to compare against
Antigens to include (specified by name or index or TRUE/FALSE for all/none)
Sera to include (specified by name or index or TRUE/FALSE for all/none)
Should translation be allowed
Should scaling be allowed (generally not recommended unless comparing maps made with different assays)
Returns an acmap object with procrustes information added, which will
be shown when the map is plotted. To avoid ambiguity about which
optimization run the procrustes was applied to, only the optimization run
optimization_number is kept in the map returned.