Read in acmap data from a file — read.acmap • Racmacs

Reads an antigenic map file and converts it into an acmap data object.

read.acmap(
  filename,
  optimization_number = NULL,
  sort_optimizations = FALSE,
  align_optimizations = FALSE
)

Arguments

filename: Path to the file.
optimization_number: Numeric vector of optimization runs to keep, the default, NULL, keeps information on all optimization runs
sort_optimizations: Should optimizations be sorted in order of stress when the map data is read?
align_optimizations: Should optimizations be rotated and translated to match the orientation of the first optimization as closely as possible?

Value

Returns the acmap data object.

See also

Other functions for working with map data: acmap(), addOptimization(), agReactivityAdjustments(), as.json(), edit_agNames(), edit_srNames(), keepBestOptimization(), keepSingleOptimization(), layerNames(), orderPoints, read.titerTable(), removePoints, save.acmap(), save.coords(), save.titerTable(), subsetCommonPoints, subsetMap()