Reads an antigenic map file and converts it into an acmap data object.

read.acmap(
  filename,
  optimization_number = NULL,
  sort_optimizations = FALSE,
  align_optimizations = FALSE
)

Arguments

filename

Path to the file.

optimization_number

Numeric vector of optimization runs to keep, the default, NULL, keeps information on all optimization runs

sort_optimizations

Should optimizations be sorted in order of stress when the map data is read?

align_optimizations

Should optimizations be rotated and translated to match the orientation of the first optimization as closely as possible?

Value

Returns the acmap data object.

See also